Welcome to deep_folding’s documentation!

README:

• Deep folding
• Prerequisites
• Generates datasets of crops
• Development

Indices and tables

• Index
• Module Index
• Search Page

API documentation

• deep_folding package
  • Subpackages
    • deep_folding.brainvisa package
      • Subpackages
        • deep_folding.brainvisa.utils package
          • Submodules
          • deep_folding.brainvisa.utils.bbox module
          • deep_folding.brainvisa.utils.constants module
          • deep_folding.brainvisa.utils.convert_volume_to_bucket module
          • deep_folding.brainvisa.utils.dilate_mask module
          • deep_folding.brainvisa.utils.distmap module
          • deep_folding.brainvisa.utils.folder module
          • deep_folding.brainvisa.utils.foldlabel module
          • deep_folding.brainvisa.utils.graph module
          • deep_folding.brainvisa.utils.logs module
          • deep_folding.brainvisa.utils.mask module
          • deep_folding.brainvisa.utils.padding module
          • deep_folding.brainvisa.utils.parallel module
          • deep_folding.brainvisa.utils.quality_checks module
          • deep_folding.brainvisa.utils.referentials module
          • deep_folding.brainvisa.utils.remove_hull module
          • deep_folding.brainvisa.utils.resample module
          • deep_folding.brainvisa.utils.save_data module
          • deep_folding.brainvisa.utils.skeleton module
          • deep_folding.brainvisa.utils.subjects module
          • deep_folding.brainvisa.utils.sulcus module
          • deep_folding.brainvisa.utils.suppress_files_from_csv module
          • deep_folding.brainvisa.utils.write_distance_map module
          • Module contents
      • Submodules
      • deep_folding.brainvisa.benchmark_generation_distmap module
      • deep_folding.brainvisa.benchmark_pipeline module
      • deep_folding.brainvisa.compute_bounding_box module
      • deep_folding.brainvisa.compute_mask module
      • deep_folding.brainvisa.display_reconstructions module
      • deep_folding.brainvisa.generate_ICBM2009c_transforms module
        • Typical usage
      • deep_folding.brainvisa.generate_crops module
      • deep_folding.brainvisa.generate_distmaps module
        • Typical usage
      • deep_folding.brainvisa.generate_foldlabels module
        • Typical usage
      • deep_folding.brainvisa.generate_skeletons module
        • Typical usage
      • deep_folding.brainvisa.mask_qc module
      • deep_folding.brainvisa.pipeline module
      • deep_folding.brainvisa.remove_ventricle module
      • deep_folding.brainvisa.resample_files module
      • Module contents
    • deep_folding.preprocessing package
      • Submodules
      • deep_folding.preprocessing.create_sets module
      • deep_folding.preprocessing.datasets module
      • deep_folding.preprocessing.generate_numpy_array module
        • Typical usage
      • deep_folding.preprocessing.pynet_transforms module
      • deep_folding.preprocessing.transforms module
      • Module contents
    • deep_folding.utils package
      • Submodules
      • deep_folding.utils.pytorchtools module
      • deep_folding.utils.save_results module
      • deep_folding.utils.split_train_test module
      • Module contents
  • Submodules
  • deep_folding.info module
  • Module contents