| pypreclin.workflow.preproc_fmri |
fMRI preprocessings using FSL, SPM, JIP, and ANTS.
Steps
- Slice Timing correction (with cache).
- B0 inhomogeneties correction (optional, with cache).
- Reorient images not in RAS coordinate system and reorient images to match
the orientation of the standard MNI152 template (with cache).
- Realign: motion correction - adjust for movement between slices (with
cache).
- Normalization: warp images to fit to a standard template brain (with cache).
- Tissues segmentation and spatial intensity variations correction (with
cache).
- Coregistration: overlay structural and functional images - link
functional scans to anatomical scan (with cache).
- Wrap functional: resample the functional serie and mask the registered
serie (with cache).
- Smooth the functional time serie (with cache).
- SNAPs: compute some snaps assessing the different processing steps (with
cache).
- Reporting: generate a QC reporting (with cache).
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